GgaEX0028912 @ galGal3
Exon Skipping
Gene
ENSGALG00000007511 | F1NM67_CHICK
Description
NA
Coordinates
chr7:7150031-7154796:-
Coord C1 exon
chr7:7154465-7154796
Coord A exon
chr7:7151527-7151651
Coord C2 exon
chr7:7150031-7150097
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGCACCTCCCCCAGAGC
3' ss Score
8.16
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATTCCCCAGAGCTGGCCTCATTTGCCTGCCAGGCAGCACTGTTGAAGGTCAAAGTGGGCAGAAGAAGGTGTTTTGGGCAGGTCCCCAGGCAGACAGGGTTCAGCTTTGGCTTTGGTGCATGGGCTGGCTGGGTTTGGGGGAAGGCGCCCGCCCACAAGCTACCGCTCCGGCTTCCTCCTTTCTGCTCCAGCCAGCGCAAGACAGAAGGAGGACAGACCAGCACCAGAGCTCCTGATTCTCAGCTGCTGCTCCCAGCCAGGCAGTGCAGCCAGGGGGCTACCAGCCTCACTGCAGTCCCAGAAGAGGAGCTGAAGGGAAGGCTTGATGTGAG
Seq A exon
AGCCCAGTCACCTGTGGAGTGCTCACGGAGATGCAGTGGGCATGGTCACAGGCAAGGATGGAGCTGCAGCCCCATCACAAAATGGCACAGCAGAGCGGAGTCCTGGGCTCTGCCACCATGACCAG
Seq C2 exon
GAAATGCCCCGTGACTGCTGCCTCTGGCTGCCAGCAATGACCTGGGTGCTGTTGCTACTGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGCTTTGGTGCATGG
R:
CAGCAGTCACGGGGCATTTC
Band lengths:
249-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]