GgaEX0028912 @ galGal4
Exon Skipping
Gene
ENSGALG00000007511 | ITGB2
Description
integrin beta-2 precursor [Source:RefSeq peptide;Acc:NP_990582]
Coordinates
chr7:7182101-7186628:-
Coord C1 exon
chr7:7186535-7186628
Coord A exon
chr7:7183597-7183721
Coord C2 exon
chr7:7182101-7182167
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGCACCTCCCCCAGAGC
3' ss Score
8.16
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCAGCTGCTGCTCCCAGCCAGGCAGTGCAGCCAGGGGGCTACCAGCCTCACTGCAGTCCCAGAAGAGGAGCTGAAGGGAAGGCTTGATGTGAG
Seq A exon
AGCCCAGTCACCTGTGGAGTGCTCACGGAGATGCAGTGGGCATGGTCACAGGCAAGGATGGAGCTGCAGCCCCATCACAAAATGGCACAGCAGAGCGGAGTCCTGGGCTCTGCCACCATGACCAG
Seq C2 exon
GAAATGCCCCGTGACTGCTGCCTCTGGCTGCCAGCAATGACCTGGGTGCTGTTGCTACTGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCCAGCCAGGCAG
R:
TTGTCAGTAGCAACAGCACCC
Band lengths:
150-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]