GgaEX0029071 @ galGal3
Exon Skipping
Gene
ENSGALG00000003164 | F1NQQ1_CHICK
Description
NA
Coordinates
chr8:4743807-4752781:-
Coord C1 exon
chr8:4752733-4752781
Coord A exon
chr8:4748131-4748136
Coord C2 exon
chr8:4743807-4743920
Length
6 bp
Sequences
Splice sites
3' ss Seq
CCACAAAGTTTCTTTTTAAGCCA
3' ss Score
2.87
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGCCCAACAAAGAAGCAGTCAGGTTAACAAAAGTGCAGTGGGAAATCAG
Seq A exon
CCACAG
Seq C2 exon
GTCATCCGGAAGGGCTGGCTGACCATCAACAATATTGGCATCATGAAAGGAGGATCCAAAGAATACTGGTTCGTTCTAACTGCAGAAAGCCTGTCCTGGTATAAAGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(8.5=70.6)
A:
NA
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAACAAAGAAGCAGTCA
R:
GGATCCTCCTTTCATGATGCCA
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]