GgaEX0004119 @ galGal3
Exon Skipping
Gene
ENSGALG00000003164 | F1NQQ1_CHICK
Description
NA
Coordinates
chr8:4743807-4756431:-
Coord C1 exon
chr8:4756361-4756431
Coord A exon
chr8:4752733-4752781
Coord C2 exon
chr8:4743807-4743920
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCTGCTTTCCTTAGTGC
3' ss Score
9.65
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGCTGCTGCTGATTGATATCCAGGTTTCTTACATCAACACCAACCATGAAGACTTCATTGGCTTTGCAAA
Seq A exon
TGCCCAACAAAGAAGCAGTCAGGTTAACAAAAGTGCAGTGGGAAATCAG
Seq C2 exon
GTCATCCGGAAGGGCTGGCTGACCATCAACAATATTGGCATCATGAAAGGAGGATCCAAAGAATACTGGTTCGTTCTAACTGCAGAAAGCCTGTCCTGGTATAAAGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-'16-18,'16-16,17-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(16.2=100)
A:
PF0103115=Dynamin_M=PD(8.5=70.6)
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAACACCAACCATGAAGACT
R:
AGGCTTTCTGCAGTTAGAACGA
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event