BtaEX0011750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014319 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr16:40408710-40472474:+
Coord C1 exon
chr16:40408710-40408780
Coord A exon
chr16:40420416-40420467
Coord C2 exon
chr16:40472360-40472474
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTTGCTTTTCTCAGTGC
3' ss Score
9
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGCTGCTGTTGATCGACATCCAAGTCTCCTACATCAACACCAACCATGAAGATTTCATTGGCTTTGCAAA
Seq A exon
TGCTCAGCAGAGAAGCAGTCAGGTTCACAAGAAAAACACAATTGGAAATCAG
Seq C2 exon
GTGATTCGCAAGGGATGGCTAACCATCAGCAATATTGGCATCATGAAAGGAGGCTCTAAGGGATACTGGTTTGTCCTTACTGCTGAGAGTTTGTCCTGGTACAAAGATGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014319_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.611 C2=NA
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.4=72.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGTTGATCGACATCCA
R:
ACCAGTATCCCTTAGAGCCTCC
Band lengths:
139-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development