DreEX6044247 @ danRer10
Exon Skipping
Gene
ENSDARG00000032238 | dnm3a
Description
dynamin 3a [Source:ZFIN;Acc:ZDB-GENE-040724-76]
Coordinates
chr20:14981868-14992544:-
Coord C1 exon
chr20:14992474-14992544
Coord A exon
chr20:14992321-14992372
Coord C2 exon
chr20:14981868-14981981
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTACACATTTCCTTTCAGCGC
3' ss Score
9.8
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTTTACTCTCATTAGAGATTCAGCTTTCTTACATCAATACCAACCATGAAGATTTTATTGGATTCGCAAA
Seq A exon
CGCTCAACAGAAAACCAGTCAACTGAGCAATAAGCCTTCAGCTGGGAACCAG
Seq C2 exon
GTCATTCGCAAAGGCTGGGTAATCATCAACAACATCAGTCTGATTAAAGGAGGATCCAAGGAGTATTGGTTCGTGCTCACCGCAGAGAGCCTATCCTGGTTTAAAGACGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032238-'12-18,'12-16,13-18=AN
Average complexity
A_C1
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.278 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.1=66.7)
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTTCTTACATCAATACCAACCA
R:
CGGTGAGCACGAACCAATACT
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]