MmuEX7000863 @ mm10
Exon Skipping
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32323179-32323730:-
Coord C1 exon
chr2:32323660-32323730
Coord A exon
chr2:32323422-32323473
Coord C2 exon
chr2:32323179-32323190
Length
52 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCTCTCTCCCATTAGTGC
3' ss Score
10.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCATGCTTCTCATCGACATTGAGCTGGCTTACATGAATACCAACCACGAAGACTTCATAGGCTTTGCCAA
Seq A exon
TGCTCAGCAGAGAAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAG
Seq C2 exon
GATGAGATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-'26-27,'26-25,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.394 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(32.9=100)
A:
PF0103115=Dynamin_M=PD(18.6=72.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types