GgaEX0006666 @ galGal3
Exon Skipping
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5671273-5674514:-
Coord C1 exon
chr17:5674444-5674514
Coord A exon
chr17:5673941-5673992
Coord C2 exon
chr17:5671273-5671386
Length
52 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGCTGTTGTTTGCAGTGC
3' ss Score
9.06
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTATGCTTCTAATAGACATTGAGCTGGCTTACATGAACACAAACCATGAGGATTTCATTGGCTTTGCCAA
Seq A exon
TGCTCAGCAGAGGAGCAGCCAGATGAGCAAGAAGAAGGCAGCTGGCAACCAG
Seq C2 exon
GTCATCCGAAAGGGCTGGCTCACCATCAACAACATTGGGATCATGAAGGGTGGCTCCAAGGAGTACTGGTTTGTCCTGACAGCGGAGAACCTCTCCTGGTATAAGGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-'13-16,'13-13,14-16
Average complexity
C1
Mappability confidence:
90%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.258 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.4=72.2)
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGCTTACATGAACACA
R:
TTCTCCGCTGTCAGGACAAAC
Band lengths:
140-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]