GgaEX0006666 @ galGal4
Exon Skipping
Gene
ENSGALG00000004852 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr17:5038674-5041915:-
Coord C1 exon
chr17:5041845-5041915
Coord A exon
chr17:5041342-5041393
Coord C2 exon
chr17:5038674-5038787
Length
52 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGCTGTTGTTTGCAGTGC
3' ss Score
9.06
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTATGCTTCTAATAGACATTGAGCTGGCTTACATGAACACAAACCATGAGGATTTCATTGGCTTTGCCAA
Seq A exon
TGCTCAGCAGAGGAGCAGCCAGATGAGCAAGAAGAAGGCAGCTGGCAACCAG
Seq C2 exon
GTCATCCGAAAGGGCTGGCTCACCATCAACAACATTGGGATCATGAAGGGTGGCTCCAAGGAGTACTGGTTTGTCCTGACAGCGGAGAACCTCTCCTGGTATAAGGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852_MULTIEX2-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.278 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.4=72.2)
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGCTTACATGAACACA
R:
TTCTCCGCTGTCAGGACAAAC
Band lengths:
140-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]