GgaEX0004119 @ galGal4
Exon Skipping
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4631490-4642417:-
Coord C1 exon
chr8:4642347-4642417
Coord A exon
chr8:4638722-4638770
Coord C2 exon
chr8:4631490-4631603
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCTGCTTTCCTTAGTGC
3' ss Score
9.65
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGCTGCTGCTGATTGATATCCAGGTTTCTTACATCAACACCAACCATGAAGACTTCATTGGCTTTGCAAA
Seq A exon
TGCCCAACAAAGAAGCAGTCAGGTTAACAAAAGTGCAGTGGGAAATCAG
Seq C2 exon
GTCATCCGGAAGGGCTGGCTGACCATCAACAATATTGGCATCATGAAAGGAGGATCCAAAGAATACTGGTTCGTTCTAACTGCAGAAAGCCTGTCCTGGTATAAAGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164_MULTIEX2-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.1=70.6)
C2:
PF0016924=PH=PU(35.6=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAACACCAACCATGAAGACT
R:
AGGCTTTCTGCAGTTAGAACGA
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]