GgaALTA1011167-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4631490-4638770:-
Coord C1 exon
chr8:4638722-4638770
Coord A exon
NA
Coord C2 exon
chr8:4631490-4631603
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CTGACTGCACCTCTGCACAGGTC
3' ss Score
7.67
Exon sequences
Seq C1 exon
TGCCCAACAAAGAAGCAGTCAGGTTAACAAAAGTGCAGTGGGAAATCAG
Seq A exon
NA
Seq C2 exon
GTCATCCGGAAGGGCTGGCTGACCATCAACAATATTGGCATCATGAAAGGAGGATCCAAAGAATACTGGTTCGTTCTAACTGCAGAAAGCCTGTCCTGGTATAAAGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-24-23,24-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.1=70.6)
A:
NA
C2:
PF0016924=PH=PU(35.6=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAACAAAGAAGCAGTCA
R:
GGATCCTCCTTTCATGATGCCA
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]