MmuEX0015310 @ mm10
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:162231654-162286067:-
Coord C1 exon
chr1:162285997-162286067
Coord A exon
chr1:162274488-162274539
Coord C2 exon
chr1:162231654-162231767
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTTGCTTTTCTCAGTGC
3' ss Score
8.7
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCCTGCTACTGATTGACATTCAAGTCTCTTACATTAACACCAACCATGAGGACTTCATCGGCTTTGCAAA
Seq A exon
TGCTCAGCAGAGGAGCAGTCAGGTTCACAAGAAAAGCACAATTGGAAATCAG
Seq C2 exon
GTGATTCGTAAGGGCTGGCTGACCGTCAGCAACATTGGCATCATGAAAGGGGGCTCGAAGGGCTACTGGTTTGTCCTCACTGCAGAAAGCCTGTCCTGGTATAAAGACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-'24-27,'24-24,27-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.153 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.1=66.7)
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACTTCATCGGCTTTGCA
R:
TCGTCTTTATACCAGGACAGGCT
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types