RnoEX0029084 @ rn6
Exon Skipping
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:80140001-80192660:-
Coord C1 exon
chr13:80192590-80192660
Coord A exon
chr13:80179969-80180020
Coord C2 exon
chr13:80140001-80140114
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTGCTTTTCTCAGTGC
3' ss Score
9.45
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCCTGCTACTGATTGACATTCAAGTCTCTTACATTAACACCAACCATGAGGACTTCATCGGCTTTGCAAA
Seq A exon
TGCTCAGCAGAGAAGCAGTCAGGTTCACAAGAAAAGCACAATTGGAAATCAG
Seq C2 exon
GTGATTCGGAAGGGCTGGCTGACCGTCAGCAACATTGGCATCATGAAAGGAGGCTCGAAGGGCTACTGGTTTGTCCTCACGGCAGAAAGCTTGTCCTGGTATAAAGACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=PD(4.1=66.7)
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCATGAGGACTTCATCGG
R:
TACCAGGACAAGCTTTCTGCC
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]