GgaEX1000499 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr8:2657534-2661123:-
Coord C1 exon
chr8:2660944-2661123
Coord A exon
chr8:2658944-2659135
Coord C2 exon
chr8:2657534-2657713
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTATTAAATTCTTTTCAAAGAGA
3' ss Score
5.16
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAGTTGTATGCTTTCCTCCAACATTTCGGAATGGAAACTTTAGACCTCAAAAAGACAGGTACACAGAAGGAGCTACAATCACAATAGACTGTGATTTGGGATATCGTTATAGCACACTGACTGCCAAAAATGTAGCTAAATGCACCAGCAGCGGCTGGGTGCCTGCTCCAGGTTGTGTTG
Seq A exon
AGAAACCATGTGACTACCCAGCTGTAGAAAATATCAGGTTGAGTGGAAATTGGCAACAGAATTACTTTCCAATGAGGATTGGGCAGACTATTTACTACCGCTGTCGTGAAGGCTACTTAACCCCAAGTGAAGAATATTGGGTTCACATTGTCTGTTCCCAAGGGGGCTGGAAGCCAGAGCCACAGTGCCTCA
Seq C2 exon
AAAGATGTGATGTCGGGCCTCTGGAAAATGGTTATATCCAAAATAATTGGAAAAGATATTTTAAAGAAGGTGAAAGAACTAAATATTTCTGCAATAAAAACTATCGTACTGAAAATGAAGATGGTGAAATTACGTGTTCAAAGAATGGCTGGTCACCTACTCCAAGATGTATCCGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTATAGCACACTGACTGCCA
R:
TCTTGGAGTAGGTGACCAGCC
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]