RnoEX6044500 @ rn6
Exon Skipping
Gene
ENSRNOG00000030715 | Cfh
Description
complement factor H [Source:RGD Symbol;Acc:620428]
Coordinates
chr13:57029508-57044200:-
Coord C1 exon
chr13:57044027-57044200
Coord A exon
chr13:57030048-57030242
Coord C2 exon
chr13:57029508-57029684
Length
195 bp
Sequences
Splice sites
3' ss Seq
TATTATTTTTTTCTTTCAAGTGA
3' ss Score
6.83
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
AAATGACATGTTTGACTCCATATATTCCAAATGGTATCTACACACCTCACAGGATTAAACACAGAATTGATGATGAAATCAGATATGAATGTAAAAATGGCTTCTATCCTGCAACCCGATCACCTGTTTCAAAGTGTACAATTACTGGCTGGATCCCTGCTCCAAGATGTAGCT
Seq A exon
TGAAACCTTGTGATTTTCCACAATTCAAACATGGACGTCTGTATTATGAAGAAAGCCGGAGACCCTACTTCCCAGTACCTATAGGAAAGGAGTACAGCTATTACTGTGACAACGGGTTTACAACGCCTTCACAGTCATACTGGGACTACCTTCGTTGCACAGTAAATGGGTGGGAGCCTGAAGTTCCATGCCTCA
Seq C2 exon
GGCAATGTATTTTCCATTATGTGGAATATGGAGAATCTTTATACTGGCAAAGAAGATATATAGAGGGTCAGTCTGCAAAAGTCCAGTGTCACAGTGGCTATAGTCTTCCAAATGGTCAAGATACAATATTATGTACAGAAAATGGCTGGTCCCCTCCTCCCAAATGCGTCCGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030715-'12-11,'12-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=PU(95.4=93.9),PF0008415=Sushi=PU(3.4=3.0)
C2:
PF0008415=Sushi=PD(3.1=3.3),PF0008415=Sushi=PD(94.8=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGCAACCCGATCACCT
R:
GATACGGACGCATTTGGGAGG
Band lengths:
246-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]