GgaEX1000510 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr8:2658944-2662663:-
Coord C1 exon
chr8:2662493-2662663
Coord A exon
chr8:2660944-2661123
Coord C2 exon
chr8:2658944-2659135
Length
180 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTCTTTCTGTGTAGAAG
3' ss Score
8.64
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATTATTTGTAATGTGCCATCAATTCCGAATGGAGTTGTAAGATCCTCACAGAAGACTTACAGGGAGTCTGAACAACTGCATTATGTCTGCAACAAAGGATACACATATGGTGAACGAGCAGATGCACAATGTACTGAATCTGGATGGTCTCCAACACCTTATTGCACTG
Seq A exon
AAGTTGTATGCTTTCCTCCAACATTTCGGAATGGAAACTTTAGACCTCAAAAAGACAGGTACACAGAAGGAGCTACAATCACAATAGACTGTGATTTGGGATATCGTTATAGCACACTGACTGCCAAAAATGTAGCTAAATGCACCAGCAGCGGCTGGGTGCCTGCTCCAGGTTGTGTTG
Seq C2 exon
AGAAACCATGTGACTACCCAGCTGTAGAAAATATCAGGTTGAGTGGAAATTGGCAACAGAATTACTTTCCAATGAGGATTGGGCAGACTATTTACTACCGCTGTCGTGAAGGCTACTTAACCCCAAGTGAAGAATATTGGGTTCACATTGTCTGTTCCCAAGGGGGCTGGAAGCCAGAGCCACAGTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431-'9-10,'9-8,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.4)
A:
PF0008415=Sushi=WD(100=91.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGAACGAGCAGATGCAC
R:
ACTGTGGCTCTGGCTTCCA
Band lengths:
249-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]