RnoEX0020650 @ rn6
Exon Skipping
Gene
ENSRNOG00000030715 | Cfh
Description
complement factor H [Source:RGD Symbol;Acc:620428]
Coordinates
chr13:57030048-57057345:-
Coord C1 exon
chr13:57057154-57057345
Coord A exon
chr13:57044027-57044200
Coord C2 exon
chr13:57030048-57030242
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTATATCTGATTCTTTTCAGAAA
3' ss Score
8.89
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
TTGTGAAGTGCTTGCCAGTGACAGAACTGGAGAATGGAAGAATTGTGAGTGGTGCAGCCGAACCAGACCAGGAATATTATTTTGGACAGGTGGTACGCTTTGAATGCAACTCCGGCTTCAAGATTGAAGGACAGAAAGAAATGCACTGCTCAGAAAATGGCCTCTGGAGCAATGAAAAGCCACAGTGTGTGG
Seq A exon
AAATGACATGTTTGACTCCATATATTCCAAATGGTATCTACACACCTCACAGGATTAAACACAGAATTGATGATGAAATCAGATATGAATGTAAAAATGGCTTCTATCCTGCAACCCGATCACCTGTTTCAAAGTGTACAATTACTGGCTGGATCCCTGCTCCAAGATGTAGCT
Seq C2 exon
TGAAACCTTGTGATTTTCCACAATTCAAACATGGACGTCTGTATTATGAAGAAAGCCGGAGACCCTACTTCCCAGTACCTATAGGAAAGGAGTACAGCTATTACTGTGACAACGGGTTTACAACGCCTTCACAGTCATACTGGGACTACCTTCGTTGCACAGTAAATGGGTGGGAGCCTGAAGTTCCATGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030715_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=PU(95.4=93.9),PF0008415=Sushi=PU(3.4=3.0)
Main Skipping Isoform:
ENSRNOT00000017749fB3025
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCAACTCCGGCTTCAA
R:
GTGCAACGAAGGTAGTCCCAG
Band lengths:
252-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]