GgaEX1000550 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr23:4311484-4315939:-
Coord C1 exon
chr23:4315727-4315939
Coord A exon
chr23:4314844-4314994
Coord C2 exon
chr23:4311484-4311619
Length
151 bp
Sequences
Splice sites
3' ss Seq
CAATTTTACTGTTTCCACAGAAG
3' ss Score
6.81
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATCAGACATGAAGTGAATTACCAGAACGTCGTACACAAGCTCTGCAGTGATGCCTGCTTCTCCAAGTTCCGCTCTGCTAATAACTTAACCATGAACTGCTGTGAGAATTGTGGAGGTTACTGCTACAGTGGGTCTGGGCAGTGTCGCATGCTGCAGATAGAGGGACAGTCAAAAAAGTTCTGCAGTTCGACATGTGTGACACTGTACAAGCAG
Seq A exon
AAGTCAGCTAAAATTACACCTTGTGCACTGTGTAAATCCTTGAGATCTTCAGCTGAGATGATAGAGAGCACAAATAACTCGGGAAAAACTGAACTGTTTTGCTCTGTTAACTGCTTGTCAGCATATAGAGTAAAAATGGTTACTTCATCAG
Seq C2 exon
GGAATGAAATGCAAAGGGAAGAAAGGAAGAAAGGCGCACAAAGACAGGAAGAGGAAGCGAAACAAAGGGCAGAAATAGCACTGATCCTAAAGAGGGGCATGTTCTCCCAGAGAGTGATGGTGACTGCAACAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_MULTIEX1-10/24=9-16
Average complexity
C2*
Mappability confidence:
95%=100=95%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.391
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
PF064679=zf-FCS=PD(95.3=80.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAACGTCGTACACAAGC
R:
TTCCTGTCTTTGTGCGCCTTT
Band lengths:
244-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]