MmuEX0053940 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126905872-126911002:-
Coord C1 exon
chr4:126910790-126911002
Coord A exon
chr4:126907086-126907236
Coord C2 exon
chr4:126905872-126906147
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTATTCTGTTAATAGAAA
3' ss Score
6.55
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTTTCGAAGTTTCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGTTATAGTGGCTCTGGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
Seq A exon
AAATCAGCCAAAATAACACCATGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAGAATACCAATAGCTTGGGGAAGACAGAACTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCCGCAG
Seq C2 exon
AATTTGTTTAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAGGTAATCGTGAGCATCCCCACAGGTTCATCAGCATCTGCAGGTGGAGGGAGTACACCCGCTGTGTCCCCCACCTCGATCAACAGCTCCGCTGCTGCTGGGCTCCAGAGGTTGGCTGCCCAGTCCCAGCATGTTGGGTTTGCCCGAAGTGTGGTGAAGCTTAGGTGTCAACATTGTAACCGTCTTTTTGCCACAAAGCCAGAGCTTCTTGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
NO
C2:
PF064679=zf-FCS=PU(61.0=27.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCAGTGATGCCTGTTT
R:
TGGGGATGCTCACGATTACCT
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types