GgaEX1001196 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:233577-240003:+
Coord C1 exon
JH375182.1:233577-233683
Coord A exon
JH375182.1:239120-239240
Coord C2 exon
JH375182.1:239740-240003
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTCAACTGTTGCCTTTTCAGACA
3' ss Score
9.52
5' ss Seq
AAGGTTTAT
5' ss Score
4.64
Exon sequences
Seq C1 exon
GTAAACAGATTAGCAAAGGATTGGGACTGAACGAATTGCTGAATATCCACAACTCCGCAAAAGTAGTAAATGTCAAAGATCCAGACCCTGGAACATGGACAATAAAG
Seq A exon
ACATCGAGCAGCGGAAGGCACTCTGTTCGGATCACGGGTCTCAGCACTATTGAATTTCGAGCTGGGTTTTCCAAGAAGTCAACGTTAGACTTCAAGAAAACATCCAGCAGACCAGTGCAAG
Seq C2 exon
GCATTCCTACCTTTGTGCTGCTAAATACCACAGGGATCCTTCTTCCAGCCAGAGTAGACCATCTTGAGCTTCTGAGTATTTCAGGGGAACCTCTTAAGACCTTGCCTGTGAAATACTATCCTGACAGAAAGCCATATGGACTATGGAACATTTCTGACTTCATTCCACCAGATGAAGCTTTTTTTCTTAAAATAATGGGCTACGACAAGGATGGTTATATTTTCCAGAGAGTGTCAAGTGTTTCATTTTCTAGTATTACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX5-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCAAAGATCCAGACCCTG
R:
ACCATCCTTGTCGTAGCCCAT
Band lengths:
253-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]