GgaEX1001197 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:239120-240324:+
Coord C1 exon
JH375182.1:239120-239240
Coord A exon
JH375182.1:239740-240003
Coord C2 exon
JH375182.1:240180-240324
Length
264 bp
Sequences
Splice sites
3' ss Seq
GCGTATTTCTGTTTTTCTAGGCA
3' ss Score
8.86
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACATCGAGCAGCGGAAGGCACTCTGTTCGGATCACGGGTCTCAGCACTATTGAATTTCGAGCTGGGTTTTCCAAGAAGTCAACGTTAGACTTCAAGAAAACATCCAGCAGACCAGTGCAAG
Seq A exon
GCATTCCTACCTTTGTGCTGCTAAATACCACAGGGATCCTTCTTCCAGCCAGAGTAGACCATCTTGAGCTTCTGAGTATTTCAGGGGAACCTCTTAAGACCTTGCCTGTGAAATACTATCCTGACAGAAAGCCATATGGACTATGGAACATTTCTGACTTCATTCCACCAGATGAAGCTTTTTTTCTTAAAATAATGGGCTACGACAAGGATGGTTATATTTTCCAGAGAGTGTCAAGTGTTTCATTTTCTAGTATTACTCCTG
Seq C2 exon
ATGCTCCAAAAGTTACAATGCCCAACAAGACTCCAGGATATTACTCACAGCCAGGGTCTGTTCCTTGCCATGTAGAAAGTCTTATACCTTTTACTCAACATTTTACTAAAAATGGAGTAAAACTAGGAGTGGATCAGTTATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX5-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGAGCAGCGGAAGG
R:
AACTGATCCACTCCTAGTTTTACTCC
Band lengths:
260-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]