GgaEX1001198 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:340457-343731:+
Coord C1 exon
JH375182.1:340457-340593
Coord A exon
JH375182.1:340824-340903
Coord C2 exon
JH375182.1:343590-343731
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTGTTCTTTTTTCCTTTAGGGG
3' ss Score
11.48
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
TTCCTCCTAATATTGCTGGTACCAGTGGTGTGCAGGACCTCACTGTGTTGCAGAACAGACAGATTATACTGGAATGCAAGTCAGATGCTGTACCACCTCCAATAATCTCATGGCTTAAAAATGGAGAACTTTTAGAG
Seq A exon
GGGGATCTCTTGCTCCTCCTGGATCCTCTGAACAATCCTAGAAGCCTTCGGTATACTTCCTGAATGGCTTCCCAGGAAAG
Seq C2 exon
GGAACTCCTCGAATTCGAATCCTATCCAATGGGCGATACATGCAAATCAATAATGCTGACCTCGGTGATACAGCAAACTATACATGTGTGGCAAGTAATATTGCAGGAAAAATGACCAGGGAGTTCATGCTGGCAGTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX6-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(46.6=89.1)
A:
NO
C2:
PF0767911=I-set=PD(51.1=93.8)
Main Inclusion Isoform:
ENSGALT00000008254fB3900
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGGTACCAGTGGTGTG
R:
TTGCATGTATCGCCCATTGGA
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]