GgaEX1001199 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:340457-344981:+
Coord C1 exon
JH375182.1:340457-340593
Coord A exon
JH375182.1:343590-343731
Coord C2 exon
JH375182.1:344837-344981
Length
142 bp
Sequences
Splice sites
3' ss Seq
AACTCTCTCTCTCCCCCTAGGGA
3' ss Score
13.35
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
TTCCTCCTAATATTGCTGGTACCAGTGGTGTGCAGGACCTCACTGTGTTGCAGAACAGACAGATTATACTGGAATGCAAGTCAGATGCTGTACCACCTCCAATAATCTCATGGCTTAAAAATGGAGAACTTTTAGAG
Seq A exon
GGAACTCCTCGAATTCGAATCCTATCCAATGGGCGATACATGCAAATCAATAATGCTGACCTCGGTGATACAGCAAACTATACATGTGTGGCAAGTAATATTGCAGGAAAAATGACCAGGGAGTTCATGCTGGCAGTACATG
Seq C2 exon
TGGCTCCAACAATTCGAAGTAGCCCTCAGACTACTGTTGTCCATTTAAACTCGTCAGTTGTTCTGGAGTGTACTGCAGAAGGAGTACCAACCCCCAGAATTGCATGGAGGAAAGATGGGAATGTTTTTAATGGAAACAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX6-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(46.6=89.1)
A:
PF0767911=I-set=PD(51.1=93.8)
C2:
PF0767911=I-set=PU(52.3=93.9)
Main Skipping Isoform:
ENSGALT00000008254fB3900
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGGTACCAGTGGTGTG
R:
TCCCATCTTTCCTCCATGCAA
Band lengths:
246-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]