BtaEX6046716 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100745846-100746959:+
Coord C1 exon
chr11:100745846-100745982
Coord A exon
chr11:100746587-100746728
Coord C2 exon
chr11:100746815-100746959
Length
142 bp
Sequences
Splice sites
3' ss Seq
GGGGCGGGGGGTCTCTCCAGGCG
3' ss Score
2.12
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CCCCCCCAAATGTCATTGGGTCCCATGGCCCCCGCTTTGTGGTTGGCCTGGCCCCCGGACAGCTGGTTCTAGAGTGCTCGGTGGAGGCAGACCCAGCACCGGAGATCGAGTGGCACCGAGAAGGCGTCCTGCTGCAG
Seq A exon
GCGGATGCTCACACCCAGTTCCCCGAGGAGGGCAGATTCCTCCAGCTGCAGGCCCTGAGCACGGCCGACAGCGGCGACTACAGCTGCACCGCCCACAACGCGGCGGGCAGCACCAGCCTGGCCTTCCACGTGGAGGTCCACA
Seq C2 exon
CGGTGCCCGCCATCCAGTCAGGACCACCCACAGTGAACGCCTCCGTGAACCAGACGACCCTGCTGCCCTGCCAGGCAGACGGTGTCCCCCAGCCCCTCGTGAGCTGGCTGAAGGACGGGGTCCCCCTCGATCCCGGGAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'77-84,'77-83,78-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.021 C2=0.367
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(41.2=71.7)
A:
PF0767911=I-set=PD(56.2=93.8)
C2:
PF0767911=I-set=PU(52.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCATTGGGTCCCATGGC
R:
TCCTTCAGCCAGCTCACGAG
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]