RnoEX0004131 @ rn6
Exon Skipping
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10420985-10422860:-
Coord C1 exon
chr3:10422724-10422860
Coord A exon
chr3:10421204-10421341
Coord C2 exon
chr3:10420985-10421129
Length
138 bp
Sequences
Splice sites
3' ss Seq
GGGGGACACTCTGCAGGCAGATG
3' ss Score
-1.86
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CCCCTCCAAATGTTGTTGGGCCCCGGGGCCCCCGCTCTGTGGTTGGCTTGGCTCCAGGGCAGCTGATCCTGGAGTGTTCCGTGGAAGCAGAACCAGCACCAGAGATTGAGTGGCATCGAGGTGGTGTCCTGCTTCAG
Seq A exon
ATGCCCACACTCACTTTCCAGAGAAGGGCAGATTCCTCAAGCTGCAGGCATTGAGCACAGCAGACGGCGGGGACTACAGCTGCACAGCCCGCAACACAGCAGGCAGCACCAGCGTGGCTTTCCACGTGGAGATTCACA
Seq C2 exon
TGGCACCCACCATCCAGCCAGGACCGAATGCTGTGAACGTCTCAGTGAACCGCACAACCCTGCTGCCCTGCCAGGCCCACGGTGTGCCCACGCCTCTCGTGAGCTGGCGGAAGGACGGGATCCCTCTGGACCCTGGGAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAATGTTGTTGGGCCCC
R:
CTTCCGCCAGCTCACGAGAG
Band lengths:
247-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]