DreEX0037776 @ danRer10
Exon Skipping
Gene
ENSDARG00000079327 | hmcn2
Description
hemicentin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9765]
Coordinates
chr8:32728896-32730495:+
Coord C1 exon
chr8:32728896-32729032
Coord A exon
chr8:32729114-32729255
Coord C2 exon
chr8:32730351-32730495
Length
142 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTCTGTCTCTCTCAGTTG
3' ss Score
11.11
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TTCCACCCACTCTCCTTGGCTCCAATGACATCAGAACTGTCTCAGTTCCAGCCAAAGGTCACTTGACTCTTGAGTGTCAAACCGACAGTGACCCTCCACCAGAGATTGAGTGGTACAAGGATAACGTCAAAGTACAG
Seq A exon
TTGGGAGGTCGAATTCAGTCCATTGCCAGTGGACAGTTTTTGGAAATTCAAGATGTCCGGATGCATGACAGTGGACAGTACAGCTGTGTGGTTACCAACATTGCTGGCAGCACTAGTCTGTTCTTTACTGTAGAGATTCTCT
Seq C2 exon
TGCCACCGGTCATCAGAGAGGGCAGCTCATTGATCATAGCACATGTCGGTCAGGATGCAGTGCTGCCATGTGAGGTGGAAGGAGCACCGTCCTCTTCTGTCATGTGGAGGAAAGATGGAGGCCCAGTTCCTCTTCACAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079327-'54-58,'54-57,55-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(44.7=82.6)
A:
PF0767911=I-set=PD(52.9=93.8)
C2:
PF0767911=I-set=PU(52.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCTCCTTGGCTCCAATG
R:
ACTGGGCCTCCATCTTTCCTC
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]