MmuEX0023016 @ mm9
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31279886-31281018:+
Coord C1 exon
chr2:31279886-31280022
Coord A exon
chr2:31280658-31280799
Coord C2 exon
chr2:31280874-31281018
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCGGGGGCTCTGCAGGCA
3' ss Score
6.09
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CCCCTCCAAATGTTGTTGGGCCCCGGGGTCCCCGCTCTGTGGTTGGCTTGGCTCCAGGGCAGCTGATCCTGGAGTGCTCCGTGGAGGCAGAGCCAGCACCAGAGATTGAGTGGCATCGAGGTGGTGTCCTGCTTCAG
Seq A exon
GCAGATGCCCACACTCACTTTCCAGAGCAGGGCAGATTCCTCAAGCTGCAGGCGCTGAGCACCGCGGATGGTGGGGACTACAGCTGCACAGCCCGCAACAGGGCAGGCAGCACCAGCGTGGCTTTCCGTGTGGAGATCCACA
Seq C2 exon
CGGCACCCACCATCCAATCAGGACCGAACACTGTGAACGTCTCAGTGAACCGCACAACCCTGCTGCCCTGCCAGACCCACGGTGTGCCCACGCCCCTCGTGAGCTGGAGGAAGGATGGGATCCCTCTGCACCCTGGGAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.167 C2=0.408
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(44.0=80.4)
A:
PF0767911=I-set=PD(53.6=93.8)
C2:
PF0767911=I-set=PU(52.3=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAATGTTGTTGGGCCCC
R:
ATCCCATCCTTCCTCCAGCTC
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: