GgaEX1001209 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:370567-376952:+
Coord C1 exon
JH375182.1:370567-370695
Coord A exon
JH375182.1:374304-374461
Coord C2 exon
JH375182.1:376833-376952
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCTCAATTCTCCCCTATAAGAGA
3' ss Score
1.22
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
ACATCAATGAGTGCCATGACAGAACCCATCAATGTCACTACAACCAGATCTGTGAGAACATGCAAGGGAGTTACCGCTGTGTGTGTCCAAGAGGGTATCGGTCACAAGGACTTGGAAGGCCTTGTGTGG
Seq A exon
AGACAACTATCAACCTCAACGGTCTTACAGGCACTCCTCAAACCTGTACAGCTCCTTCTCAGAGTATAGGAACAGCAGAATACCTGTCTCCAGAACTAAAAGGAGCATTAGAGAAACTTGTCCTGAAGGCTATGAGGCAAGAAATGACAGATGTGTAG
Seq C2 exon
ACATTGATGAATGTGAAGCCAGAGATACATGCCAGCACGAGTGCAGGAACACCCTGGGAAGTTACCAGTGTGCTTGTCCCTCTGGTTATCATCTTATGCCCAACGGCAAAACCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX9-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NO
C2:
PF126622=cEGF=PU(83.3=48.8)
Main Inclusion Isoform:
ENSGALT00000008254fB3902
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAATGAGTGCCATGACAGA
R:
CCGTTGGGCATAAGATGATAACCA
Band lengths:
235-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]