GgaEX1001210 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH375182.1:370567-377717:+
Coord C1 exon
JH375182.1:370567-370695
Coord A exon
JH375182.1:376833-376952
Coord C2 exon
JH375182.1:377591-377717
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCATGTTTCTTTCTCACAGACA
3' ss Score
10.47
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ACATCAATGAGTGCCATGACAGAACCCATCAATGTCACTACAACCAGATCTGTGAGAACATGCAAGGGAGTTACCGCTGTGTGTGTCCAAGAGGGTATCGGTCACAAGGACTTGGAAGGCCTTGTGTGG
Seq A exon
ACATTGATGAATGTGAAGCCAGAGATACATGCCAGCACGAGTGCAGGAACACCCTGGGAAGTTACCAGTGTGCTTGTCCCTCTGGTTATCATCTTATGCCCAACGGCAAAACCTGCCAAG
Seq C2 exon
ACATTGATGAGTGCCTCAAGCAGGACACTGGCTGTGGAGCAAGCCAGATGTGCTTCAACATGAGAGGGAGCTACCAATGCATAGAGACATCTTGCCCACCAAACTATCAGCGGGAGCCTCATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141_MULTIEX9-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF126622=cEGF=PU(83.3=48.8)
C2:
PF126622=cEGF=PD(12.5=7.0)
Main Skipping Isoform:
ENSGALT00000008254fB3902
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCATGACAGAACCCATCA
R:
AATGAGGCTCCCGCTGATAGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]