DreEX0037780 @ danRer10
Exon Skipping
Gene
ENSDARG00000079327 | hmcn2
Description
hemicentin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9765]
Coordinates
chr8:32762953-32773608:+
Coord C1 exon
chr8:32762953-32763264
Coord A exon
chr8:32766722-32766841
Coord C2 exon
chr8:32773482-32773608
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTGCTTTTCAAAGATA
3' ss Score
7.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATTGATGAATGTGCACAGGTGCCAAGTCCTTGTGCTTTTCAGTGCCGCAACGTACCAGGCAGTTTCCGCTGCGTATGCCCACCAGGGACAGTCCTTCTGGGGGATGGTCGCTCTTGCGCTGGGCTTGAGAGAGGCCACATCTTCACCAACAGTACCCGGGTGCAAGCCAGACTGCGGCCACAGCTGGTATCTGCTTTGGAGAGACCTTACCTCACTCGCCTCTCAGTCCTACCAGAGCACCTTGGTTCCTCACGTCGCCCCCGGCATGAATGCCCCGTAGGATATACTAGCAAGGATGGAACTTGTATAG
Seq A exon
ATATCGATGAATGCGCATTTAGAAAGCCTTGTCAACATGAGTGCAGAAACACTATAGGAAGCTACCAGTGCACCTGCCCACCAGGATACCAATTATTATCCAATGGACGGACATGCAAAG
Seq C2 exon
ATATCGATGAGTGCACAGTACAGGGTGTCCAGTGTGGACCAAACCAAATGTGTTTTAACACTCGAGGGGGTTACCAGTGTCTGGACACACCCTGCCCCAACAGCTACCAAAGAGGACGTAATCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079327-'88-94,'88-93,89-94
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=38.1),PF126622=cEGF=PU(77.8=13.3)
A:
PF126622=cEGF=PD(16.7=7.3),PF126622=cEGF=PU(83.3=48.8)
C2:
PF126622=cEGF=PD(12.5=7.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAGCTGGTATCTGCTTT
R:
CTCTTTGGTAGCTGTTGGGGC
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]