GgaEX0007066 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:379031-382637:+
Coord C1 exon
chr8_random:379031-379381
Coord A exon
chr8_random:381753-381872
Coord C2 exon
chr8_random:382511-382637
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCATGTTTCTTTCTCACAGACA
3' ss Score
10.47
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ACATTAATGAATGTGAACAAGTGCCTAAGCCCTGTGCATTTCAGTGCACCAACACCCCTGGCAGCTTCAAGTGTATCTGTCCACCTGGACAACATTTATTAGGTGATGGGAAATCTTGTGCTGGATTGGAGAGATTGCTACATTCCGGTGCCTATTACAATATCTATAACTATGCTCAATTCTCCCCTATAAGAGACAACTATCAACCTCAACGGTCTTACAGGCACTCCTCAAACCTGTACAGCTCCTTCTCAGAGTATAGGAACAGCAGAATACCTGTCTCCAGAACTAAAAGGAGCATTAGAGAAACTTGTCCTGAAGGCTATGAGGCAAGAAATGACAGATGTGTAG
Seq A exon
ACATTGATGAATGTGAAGCCAGAGATACATGCCAGCACGAGTGCAGGAACACCCTGGGAAGTTACCAGTGTGCTTGTCCCTCTGGTTATCATCTTATGCCCAACGGCAAAACCTGCCAAG
Seq C2 exon
ACATTGATGAGTGCCTCAAGCAGGACACTGGCTGTGGAGCAAGCCAGATGTGCTTCAACATGAGAGGGAGCTACCAATGCATAGAGACATCTTGCCCACCAAACTATCAGCGGGAGCCTCATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'125-143,'125-142,126-143
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=33.9),PF126622=cEGF=PU(77.8=11.9)
A:
PF126622=cEGF=PD(16.7=7.3),PF126622=cEGF=PU(83.3=48.8)
C2:
PF126622=cEGF=PD(12.5=7.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGTCTTACAGGCACTCC
R:
CGCTGATAGTTTGGTGGGCAA
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]