GgaEX0007065 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:375487-381872:+
Coord C1 exon
chr8_random:375487-375615
Coord A exon
chr8_random:379031-379377
Coord C2 exon
chr8_random:381753-381872
Length
347 bp
Sequences
Splice sites
3' ss Seq
GGATCATGGCACATGAACAGACA
3' ss Score
-0.85
5' ss Seq
TGTGTAGGT
5' ss Score
1.48
Exon sequences
Seq C1 exon
ACATCAATGAGTGCCATGACAGAACCCATCAATGTCACTACAACCAGATCTGTGAGAACATGCAAGGGAGTTACCGCTGTGTGTGTCCAAGAGGGTATCGGTCACAAGGACTTGGAAGGCCTTGTGTGG
Seq A exon
ACATTAATGAATGTGAACAAGTGCCTAAGCCCTGTGCATTTCAGTGCACCAACACCCCTGGCAGCTTCAAGTGTATCTGTCCACCTGGACAACATTTATTAGGTGATGGGAAATCTTGTGCTGGATTGGAGAGATTGCTACATTCCGGTGCCTATTACAATATCTATAACTATGCTCAATTCTCCCCTATAAGAGACAACTATCAACCTCAACGGTCTTACAGGCACTCCTCAAACCTGTACAGCTCCTTCTCAGAGTATAGGAACAGCAGAATACCTGTCTCCAGAACTAAAAGGAGCATTAGAGAAACTTGTCCTGAAGGCTATGAGGCAAGAAATGACAGATGT
Seq C2 exon
ACATTGATGAATGTGAAGCCAGAGATACATGCCAGCACGAGTGCAGGAACACCCTGGGAAGTTACCAGTGTGCTTGTCCCTCTGGTTATCATCTTATGCCCAACGGCAAAACCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'121-142,'121-141,124-142
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=33.9),PF126622=cEGF=PU(77.8=11.9)
C2:
PF126622=cEGF=PD(16.7=7.3),PF126622=cEGF=PU(83.3=48.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGTGCCATGACAGAACCC
R:
CCGTTGGGCATAAGATGATAACCA
Band lengths:
230-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]