RnoEX0042123 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67809640-67816771:-
Coord C1 exon
chr13:67816643-67816771
Coord A exon
chr13:67813501-67813851
Coord C2 exon
chr13:67809640-67809759
Length
351 bp
Sequences
Splice sites
3' ss Seq
GTATCATGGCACACGAGCAGACA
3' ss Score
-1.52
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
ACATTGATGAGTGCAAAGATGGGACCCACCAATGCAGATATAACCAAATATGTGAGAACACGAGAGGCAGCTACCGGTGTGCATGCCCAAGGGGTTATCGGTCTCAAGGAGTTGGAAGACCCTGCGTTG
Seq A exon
ACATTAATGAATGTGACCAAGTACCTAAACCTTGTGCACATCAGTGCTCCAACAGCCCCGGCAGCTTCAAGTGTATCTGTCTGCCAGGACAACATTTATTAGGGGATGGGAAATCTTGCGCTGGATTGGAGAGGCTGTCGAGTTATGGCACTCAGTACAGTAGCTATGACCTTGAGCGGTTCTCCCCTGTGAGAAGTGGCTATCAACCTCGGCAGCATACCAGACAGCAGTCACAGCTCTACAGCTCCTACTCAGAGTATAGGAACAGCAGAGCATCTTTCTCCAGGAGTAGAAGGACTATTAGGAAAACTTGCCCTGAAGGCTCTGAGGCAAACCATGAAACATGTGTAG
Seq C2 exon
ATATTGATGAATGTCAAAACAGAGATACTTGCCAACATGAGTGTAAAAACACGATCGGAAGCTACCAGTGCGTCTGCCCACCGGGTTATCGACTCATGCTCAATGGGAAAACATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.012
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=33.9)
C2:
PF0764510=EGF_CA=WD(100=95.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGTGCAAAGATGGGACC
R:
CTTGGCATGTTTTCCCATTGAGC
Band lengths:
246-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]