RnoEX6044663 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67802690-67816771:-
Coord C1 exon
chr13:67816643-67816771
Coord A exon
chr13:67809640-67809759
Coord C2 exon
chr13:67802690-67802816
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCTTTCTAAACAGATA
3' ss Score
11.55
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACATTGATGAGTGCAAAGATGGGACCCACCAATGCAGATATAACCAAATATGTGAGAACACGAGAGGCAGCTACCGGTGTGCATGCCCAAGGGGTTATCGGTCTCAAGGAGTTGGAAGACCCTGCGTTG
Seq A exon
ATATTGATGAATGTCAAAACAGAGATACTTGCCAACATGAGTGTAAAAACACGATCGGAAGCTACCAGTGCGTCTGCCCACCGGGTTATCGACTCATGCTCAATGGGAAAACATGCCAAG
Seq C2 exon
ATGTCGATGAGTGCTTGGAGCAGAATGTACGCTGTGGGCCGAATCGCATGTGTTTCAACATGAGAGGAAGCTATCAGTGCATCGACACACCCTGTCCACCCAACTACCAACGAGATCCTGTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'123-125,'123-124,126-125=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1)
C2:
PF126622=cEGF=PD(16.7=9.3),PF129472=EGF_3=WD(100=81.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGGGACCCACCAATGC
R:
CCCAAAACAGGATCTCGTTGGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]