GgaEX1002275 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19794086-19796712:-
Coord C1 exon
chr9:19796587-19796712
Coord A exon
chr9:19795991-19796119
Coord C2 exon
chr9:19794086-19794214
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTTAATTCTCTGTAGTGT
3' ss Score
6.49
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTGCCCAGAAAATCGATACGGGAAGGACTGCGCCCTGTTCTGTGCATGCGGTAAAGGTCATTGTGACCCACGGACTGGCAGCTGTACCTGTCCTCCTGGCCAAATGGGACCTGGCTGTCAGCAAG
Seq A exon
TGTGTCCCCAGGGACGGTTCGGCCCCAGCTGCCGCCTGACATGCAGCTGTCAGAACGGTGCTATCTGTGACCACGTGGATGGCAGCTGCACTTGTGGACTTGGCTGGACAGGAAAATCGTGTGAGAAAG
Seq C2 exon
AATGTCTCCCTGGCAAGTACGGCCCCAACTGCAGCTTGGACTGCTCATGCCAGCACAACGGCACCTGCGACAGGTTCACGGGCTGCTGCCTCTGCCCCGCGGGGTTCTACGGGCGCTCCTGTGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'41-40,'41-37,42-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGAAAATCGATACGGG
R:
CACAGGAGCGCCCGTAGAA
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]