DreEX6077660 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35470162-35481121:+
Coord C1 exon
chr15:35470162-35470290
Coord A exon
chr15:35477903-35478031
Coord C2 exon
chr15:35480993-35481121
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTATGTTTTCATCCATGCAGTGT
3' ss Score
7.84
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTGTCCCTCAGGTCACTACGGGAGAGACTGTGCTCAGGTGTGTTCATGTGGGGAGAAAGGACAGTGCCACCCAGAGACAGGGAGGTGTAACTGCGCCCCTGGTACAACAGGACTGTCCTGTGAACAAA
Seq A exon
TGTGTCCAAGGGGCCGCTATGGAGTGCAGTGTCGGAGTTTCTGTACTTGTGCAAACGGAGGAGTGTGTGACCCTGTGAATGGGACGTGCAGATGTGGGCTGGGCTGGACAGGACAACATTGTGAAAAAG
Seq C2 exon
TTTGTGTCTCAGGTCACTATGGTGTGAACTGTGAGCAGAAGTGTGTCTGCCAGAATAACGGTACATGCGATCGTTTTACCGGATGCTGCTCTTGCCGGTCCGGATACTACGGCCCCGCCTGCCAACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'48-49,'48-47,49-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(70.2=75.0)
A:
PF0005319=Laminin_EGF=PD(27.7=29.5),PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF079748=EGF_2=WD(100=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGTCACTACGGGAGAG
R:
GGCGGGGCCGTAGTATCC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]