MmuEX6098376 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154265660-154266579:+
Coord C1 exon
chr4:154265660-154265788
Coord A exon
chr4:154266134-154266262
Coord C2 exon
chr4:154266451-154266579
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTTCTGGGCCTCAGCCT
3' ss Score
4.85
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
CTTGCCCACCTCTCACCTTTGGGCTTAACTGCAGCCAGATTTGTACCTGTTTCAATGGGGCCTCTTGCGACCCTGTCCTTGGGCAGTGCCACTGTGCTCCTGGCTGGATGGGACCCACCTGCCTGCAGG
Seq A exon
CCTGCCCTGCTGGCCTGTATGGCAAGAACTGTCAGCATTCCTGTCTCTGCCGAAATGGAGGGAACTGTGACCCCATCTTGGGCCAGTGCACGTGCCCAGAGGGTTGGACCGGCTTGGCCTGTGAGAACG
Seq C2 exon
AGTGCCTTCCTGGACACCATGGGGCTGGTTGCCGGCTCAACTGCAGTTGCCTTAATGGGGGCACATGTGACCGTCTTACTGGCCACTGCCGCTGCCCAACTGGCTGGACTGGGGACAAGTGTCAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'35-38,'35-33,40-38=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079748=EGF_2=WD(100=70.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCCACCTCTCACCTTTG
R:
TCTGACACTTGTCCCCAGTCC
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types