GgaEX1035873 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1023004-1024269:+
Coord C1 exon
chr21:1023004-1023132
Coord A exon
chr21:1023911-1024039
Coord C2 exon
chr21:1024147-1024269
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTGGTTTCCTTACAGCAT
3' ss Score
10.2
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CGTGCCCGCAGGGCAGGTTTGGTGAGGGCTGCAGCCAGGTGTGCAGCTGCTCCAACAATGCCACGTGTGACCACATCACTGGCCGCTGTCTGTGCACTGCTGGCTGGATGGGACCCACATGCCAGCAAG
Seq A exon
CATGCCCAGAGGGGTTCTATGGGACAGGCTGCCACCAGCATTGCCTGTGCCAGAACGGGGGGACATGCGACCCCACCACGGGGCACTGCATCTGCCCAATGGGATGGACTGGGCTGGCCTGTGAGCTGG
Seq C2 exon
CGTGCGCTGAGGGGCACGGGGACGGCTGCGGGCAGCGCTGCGCCTGCCTGAACGGGGGGGTCTGCGACCCACAGGGACAGTGCCAGTGCCCACCTGGGTGGAGTGGGAGCAGCTGTGAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'28-33,'28-32,29-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
PF079748=EGF_2=WD(100=70.5)
C2:
PF126612=hEGF=WD(100=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCAGGTTTGGTGAG
R:
CTCTCACAGCTGCTCCCACTC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]