GgaEX1002459 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNP0]
Coordinates
chr8:20789750-20790800:+
Coord C1 exon
chr8:20789750-20789814
Coord A exon
chr8:20790270-20790352
Coord C2 exon
chr8:20790583-20790800
Length
83 bp
Sequences
Splice sites
3' ss Seq
GGCCTTTGCTGCTCCCACAGGTA
3' ss Score
8.62
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GCTCCCAGGTTTCGTTGAACATATTTGGTATCCACAGGAACCGGGATGTATGGGAAGATCCCGAG
Seq A exon
GTATTTGATCCCCTGAGGTTTTCTCCTGAGAACTCAGCACACAGGCATTCACATGCATTCCTGCCTTTCTCTGCTGGATCCAG
Seq C2 exon
GAACTGCATTGGGCAGCAGTTTGCTATGAACGAGATGAAGGTGGCTCTGGCACTGACCCTGCTCCGCTTCGAGCTGTTCCCCAATGCCTCCAAGCCTCCTATGCTGACACAGCAGCTCATCCTCAAGTCCAGAAGCGGTATCCACCTGCATCTGAAAAAGATTTGCTGACCTGATGAGGTGCCACAAGCAGTTCCCAAAGGCCACTCTTCACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469-'13-21,'13-19,15-21
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
PF0006717=p450=FE(6.0=100)
C2:
PF0006717=p450=PD(11.3=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCAGGTTTCGTTGAACA
R:
TGTCAGCATAGGAGGCTTGGA
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]