RnoEX6022824 @ rn6
Exon Skipping
Gene
ENSRNOG00000043513 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:RGD Symbol;Acc:628719]
Coordinates
chr5:133929532-133932507:-
Coord C1 exon
chr5:133932443-133932507
Coord A exon
chr5:133930872-133930954
Coord C2 exon
chr5:133929532-133929706
Length
83 bp
Sequences
Splice sites
3' ss Seq
GGGTTGTCCTCTCATTTCAGGTC
3' ss Score
10.66
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAATGACTGTGGTCCTTAGTATTTGGGGTCTCCACCACAATCCTGCTGTCTGGAAAGACCCAAAG
Seq A exon
GTCTTTGACCCTTTGAGATTCACTAAGGAGAATTCTGAACAGAGACACCCCTGCGCCTTCCTACCATTCTCCAGTGGTCCAAG
Seq C2 exon
GAACTGCATCGGGCAGCAGTTTGCCATGCTGGAGTTAAAGGTGGCCATTGCCTTGACTCTGCTCCGCTTCCGAGTAGCTGCAGACCTCACCAGGCCTCCTGCCTTCTCCAGCCACACTGTGCTCAGACCCAAGCATGGGATCTATTTGCACCTGAAGAAACTCCCTGAATGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043513-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
PF0006717=p450=FE(5.9=100)
C2:
PF0006717=p450=PD(11.2=86.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCACAATCCTGCTGTC
R:
CTTGGGTCTGAGCACAGTGTG
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]