GgaEX6044756 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20778392-20780775:+
Coord C1 exon
chr8:20778392-20778456
Coord A exon
chr8:20778831-20778913
Coord C2 exon
chr8:20779069-20780775
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTATATACTTCATTCCCAGGTG
3' ss Score
7.8
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GCACTATCACTGCAATAAGCATTTATCTCATTCACCGAAATCCCTTGGTATGGAAGGATCCTTTG
Seq A exon
GTGTTTGACCCACTGCGGTTTTCTCCAGAGAACGTATCTGGCAGGCACTCTCACGCCTTTCTGCCTTTTGCTGCTGGAATGAG
Seq C2 exon
GAACTGCATTGGGCAGCAGTTTGCCATGATTGAGATGAAGGTGGCCCTGGCGCTGATCCTGCTCCGCTTCGAGCTGTCCCCTGACCTCACCAATCCCCCCCATAAGATACCTCGGCTCATCCTTCGCTCCAAGAACGGCATTCATTTGTACTTAAAGAAAATCCATTGATGCTGGAAAATGGCCTGAGTGTCAGTGGGAGGGACTGAGCAGACCAGGATGAAATGTTTGCCTCGGATACAGGGTGCACAGTAGCTTGGGGTACGAGGATTCCTAGCTCCTGTGTGGCTGCCAACATCCAAACTTGTCCCTGTGGGCACCCCAGTGCCTGCAGGTCAGCTCAGAGCTGACCTCACCTCTTCTCTCACTCAATGCCTGATTGCACTCAATGCACTGGTTACGGTTTGGGCTCGGAACTTTTGCTCAAGCTGCAAAATATGATGTGATTTTTGCATTAATAAACCATTGATTCCTGTAACAGCTGCTGTATTGAGTTTGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688-'10-13,'10-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
PF0006717=p450=FE(5.9=100)
C2:
PF0006717=p450=PD(10.9=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGAAATCCCTTGGTATGGA
R:
CCGTTCTTGGAGCGAAGGATG
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]