GgaEX6044756 @ galGal3
Exon Skipping
Gene
ENSGALG00000020687 | E1C120_CHICK
Description
NA
Coordinates
chr8:22600403-22601553:+
Coord C1 exon
chr8:22600403-22600467
Coord A exon
chr8:22600842-22600924
Coord C2 exon
chr8:22601080-22601553
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTATATACTTCATTCCCAGGTG
3' ss Score
7.8
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GCACTATCACTGCAATAAGCATTTATCTCATTCACCGAAATCCCTTGGTATGGAAGGATCCTTTG
Seq A exon
GTGTTTGACCCACTGCGGTTTTCTCCAGAGAACGTATCTGGCAGGCACTCTCACGCCTTTCTGCCTTTTGCTGCTGGAATGAG
Seq C2 exon
GAACTGCATTGGGCAGCAGTTTGCCATGATTGAGATGAAGGTGGCCCTGGCGCTGATCCTGCTCCGCTTCGAGCTGTCCCCTGACCTCACCAATCCCCCCCATAAGATACCTCGGCTCATCCTTCGCTCCAAGAACGGCATTCATTTGTACTTAAAGAAAATCCATTGATGCTGGAAAATGGCCTGAGTGTCAGTGGGAGGGACTGAGCAGACCAGGATGAAATGTTTGCCTCGGATACAGGGTGCACAGTAGCTTGGGGTACGAGGATTCCTAGCTCCTGTGTGGCTGCCAACATCCAAACTTGTCCCTGTGGGCACCCCAGTGCCTGCAGGTCAGCTCAGAGCTGACCTCACCTCTTCTCTCACTCAATGCCTGATTGCACTCAATGCACTGGTTACGGTTTGGGCTCGGAACTTTTGCTCAAGCTGCAAAATATGATGTGATTTTTGCATTAATAAACCATTGATTCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020687-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(17.5=100)
C2:
PF0006717=p450=PD(32.5=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGAAATCCCTTGGTATGGA
R:
CCGTTCTTGGAGCGAAGGATG
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]