RnoEX0025989 @ rn6
Exon Skipping
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134508730-134509908:-
Coord C1 exon
chr5:134509844-134509908
Coord A exon
chr5:134509665-134509747
Coord C2 exon
chr5:134508730-134509293
Length
83 bp
Sequences
Splice sites
3' ss Seq
AGCCCTATCTGTCTCCTCAGGTC
3' ss Score
10.33
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCAGCCTGATCTCTCTGCACATCTACGCCCTCCACAGGAACAGTACTGTGTGGCCTGATCCAGAG
Seq A exon
GTCTTTGACCCACTGCGCTTTTCTCCTGAGAATGCTGCAGGACGGCATCCCTTTGCCTTCATGCCTTTTTCTGCAGGGCCCAG
Seq C2 exon
GAATTGCATCGGGCAGCAGTTTGCCATGAACGAGATGAAGGTGGTCACAGCCCTTTGTTTACTGCGCTTTGAGTTCTCCCTGGATCCCTCAAAGATGCCCATTAAGGTCCCCCAGCTGATCTTGCGCTCCAAAAATGGTATCCACCTCTACCTGAAGCCGCTGGCTTCTAGGTCTGGAAAGTAGGTCTTCAGAGAACTAGGCCTGGGCAGCACAAGCCGTGACTCTTCCTGGGATGTTGCCCTCCTAGATAGAATGTGGAGTCATCATGGATCCCTGCCTGTGGGAGGCTTTGGAGGCAAAAGCATGGACACTGACAGTCTCCTGGAAGACATTCTCTTGTAAACATGTGTGTGGAATGATTCAACGCCCAGGCTCCAGAACTTATTTCTTCACTCCACAACATTTGCTGAACGTTTTGCTGCCTTGAGAAACTCCATTGATTTCACATAGCTACATTTATTTAACCATCTTGGTGTGTATTTGGAATACGATGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078-'18-19,'18-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
PF0006717=p450=FE(5.9=100)
C2:
PF0006717=p450=PD(11.0=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTGTGGCCTGATCCAGA
R:
CGGCTTCAGGTAGAGGTGGAT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]