BtaEX6017980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99666161-99668053:-
Coord C1 exon
chr3:99667989-99668053
Coord A exon
chr3:99667152-99667231
Coord C2 exon
chr3:99666161-99666329
Length
80 bp
Sequences
Splice sites
3' ss Seq
GGGTTACCCTCTCATTTCAGGTC
3' ss Score
9.92
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAATGACTGTGGTTCTCAGTATCTGGGGTCTCCACCACAACCCCGCCGTCTGGGAAAACCCAGAG
Seq A exon
GTCTTTGACCCCTTGAGGTTCTCCCAGGAATGTAATAAAAGACACTCCCATGCTTACTTACCATTCTCATCTGGACCAAG
Seq C2 exon
GAACTGCATCGGGCAGAATTTTGCCATAGCTGAGATAAAGGTGATTGTTGCCTTGATTCTGCTCCGCTTCCAGATGAGAGTAGAGCCCACCAAGCCTGTTGTCTTCGTGCCCTACATTTTCATCAAACCCAAGAAGGGGATCTACTTGCACCTGAAGAAACTCCCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.8=100)
A:
PF0006717=p450=FE(6.0=100)
C2:
PF0006717=p450=PD(11.7=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTCTCAGTATCTGGGGT
R:
GTAGGGCACGAAGACAACAGG
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]