MmuEX6095190 @ mm9
Exon Skipping
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:114778928-114784287:-
Coord C1 exon
chr4:114784223-114784287
Coord A exon
chr4:114782634-114782716
Coord C2 exon
chr4:114778928-114781461
Length
83 bp
Sequences
Splice sites
3' ss Seq
AGGTGGTCTTCTCGTTTCAGGTC
3' ss Score
9.75
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTATGACTGTGGTTCTTAGTATTTGGGGTCTCCACCACAACCCTGCTGTCTGGAACGACCCAAAG
Seq A exon
GTCTTTGACCCCTTGAGATTCACTAAGGAGAATTCTGATCAGAGACACCCCTGTGCCTTCCTACCATTCTCCAGTGGTCCAAG
Seq C2 exon
GAACTGCATCGGGCAGCAGTTTGCCATGCTGGAGCTAAAGGTGGCCATTGCCTTGATTCTGCTCCACTTTCAAGTAGCTCCAGACCTCACCAGGCCTCCTGCCTTCTCCAGCCACACTGTCCTCAGACCCAAGCATGGAATCTATTTGCACCTGAAGAAACTCCTTGAGTGTTAGATACTAGGAGAAATGGCGAAATTTATGTTTGTTGTTAAGTTAAATTTACAGCCCATGGTCCAGGCAAGTGGAAAAGAATCTAAGATTGATAGAAGCCTTGGAGGACTGTGGGTTGGAGCATTTCTACAGCTGCACATTACCCAAAGTTATTTTCAGGTAACACATGTGACCCTGATAAGTATAACTTGGAGAGATTGTCAAATTATTTTCTAATGGTTATTACCAATCTTATCTGAAGTGGGAATTTCTGAGTTCACTGGAGACTCAGTTGTGCCATGTGATGTTCTTCTGGAAGCTGTCTTATGAGAGGATGTTTTGCTGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
PF0006717=p450=FE(5.9=100)
C2:
PF0006717=p450=PD(11.2=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACCCTGCTGTCTGGAAC
R:
TTCCATGCTTGGGTCTGAGGA
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: