GgaEX1002464 @ galGal3
Exon Skipping
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22608461-22609406:+
Coord C1 exon
chr8:22608461-22608505
Coord A exon
chr8:22608777-22608904
Coord C2 exon
chr8:22609294-22609406
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTCTGGTGTCTACAGGCA
3' ss Score
8.43
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATCCCAAGCCTCCTGTACCTTATCAGTTCTTAGTTCCATGGATTG
Seq A exon
GCAAAGGGTTGCTGGTCTTGAGTGGAACCAAATGGTTTCAGCATCGGAAGTTGCTCACTCCAGCGTTTCACTATGATGTGCTGAAATCTTACGTGTCCCTGATGTCAGACTCAGTCAAAGTGATGTTG
Seq C2 exon
GATAAATGGGAGAAGAAGAAGTCAGTAGAGCTCTTCGAAGACGTCAGCCTGATGGCGCTGGACAGCATCATGAAATGCGCCTTCAGCTACAACGCCAACTGCCAGACTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
PF0006717=p450=FE(9.3=100)
C2:
PF0006717=p450=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAAGCCTCCTGTACCTT
R:
CTCTGAGTCTGGCAGTTGGC
Band lengths:
158-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]