MmuEX6095193 @ mm9
Exon Skipping
Gene
ENSMUSG00000028715 | Cyp4a14
Description
cytochrome P450, family 4, subfamily a, polypeptide 14 [Source:MGI Symbol;Acc:MGI:1096550]
Coordinates
chr4:115165215-115166818:-
Coord C1 exon
chr4:115166774-115166818
Coord A exon
chr4:115166180-115166307
Coord C2 exon
chr4:115165215-115165339
Length
128 bp
Sequences
Splice sites
3' ss Seq
CATATCAGTCTCTGGCACAGGTT
3' ss Score
3.5
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATCCAAAGGCTTCTGGAATTTATCAATTCTTTGCTCCCTGGATTG
Seq A exon
GTTATGGTTTGCTCCTGTTGAATGGGAAGAAGTGGTTCCAGCATCGGCGGATGTTGACTCCAGCCTTCCACTATGATATCCTCAAACCCTATGTCAAAATCATGGCGGACTCTGTCAATATAATGCTA
Seq C2 exon
GATAAATGGGAGAAGCTTGATGGCCAGGACCACCCTCTGGAGATCTTCCACTGTGTTTCATTGATGACACTGGACACTGTTATGAAGTGTGCTTTCAGCTACCAAGGCAGTGTTCAGTTGGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028715-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
PF0006717=p450=FE(9.3=100),PF0075813=EPO_TPO=PU(20.9=41.9)
C2:
PF0006717=p450=FE(9.1=100),PF0075813=EPO_TPO=FE(47.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAAGGCTTCTGGAATTTATCA
R:
TCATCCAACTGAACACTGCCT
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: