HsaEX1010887 @ hg38
Exon Skipping
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450 family 4 subfamily A member 11 [Source:HGNC Symbol;Acc:HGNC:2642]
Coordinates
chr1:46936346-46937346:-
Coord C1 exon
chr1:46937302-46937346
Coord A exon
chr1:46936664-46936791
Coord C2 exon
chr1:46936346-46936446
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACATTCATGTCTCTCTTAGGGT
3' ss Score
9.02
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACCCGAAATCCCATGGTTCCTACAGATTCCTGGCTCCATGGATTG
Seq A exon
GGTACGGCTTGCTCCTGTTGAATGGGCAGACATGGTTCCAGCATCGACGGATGCTGACCCCAGCCTTCCACTATGACATCCTGAAGCCCTATGTGGGGCTCATGGCAGACTCTGTACGAGTGATGCTG
Seq C2 exon
GAATAGAGATTCATGGTGAATGCAAGGCCCTTCTCCTCCCACTTTGGAACCTTCAGCACAAGGGACTGGAGGAGTATGCAATCTTGCTGGACAGTAGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=75=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
PF0006717=p450=FE(10.4=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGAAATCCCATGGTTCCT
R:
AGTCCTACTGTCCAGCAAGAT
Band lengths:
146-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains