BtaEX6017973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99687491-99692164:-
Coord C1 exon
chr3:99692120-99692164
Coord A exon
chr3:99690535-99690662
Coord C2 exon
chr3:99687491-99687618
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTGCCTTTAATTTCTCAAGGAA
3' ss Score
7.03
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATCCCAAGTCCAACTTCCTGTATAAGTTCATGACTGCAAGCGTTG
Seq A exon
GAAAAGGACTAGTGAATTTGAGTGGACCCAAATGGTCTCAGCACCGTCGTCTACTAACTCCTGGATTCCATTTTAATACCTTGAAATCGTTTGTCGAGGTGATGGCTCAATCTGTGAACATCATGCTG
Seq C2 exon
AATAAGTGGGAGAAGATTTGTGGCTCTCAGAATACACTTCTGGATATCTATGAGCACATCAACTTGATGACCCTGGACGTACTCATGAAATGTATTTTCAGCTGGGAAACCAACTGCCAAACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.4=100)
A:
PF0006717=p450=FE(9.6=100)
C2:
PF0006717=p450=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAAGTCCAACTTCCTGT
R:
GTCTGTTTGGCAGTTGGTTTCC
Band lengths:
171-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]