HsaEX6030787 @ hg19
Exon Skipping
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:20244]
Coordinates
chr1:47497108-47501605:+
Coord C1 exon
chr1:47497108-47497152
Coord A exon
chr1:47498913-47499040
Coord C2 exon
chr1:47501478-47501605
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTTTATTTCTCAAGGAA
3' ss Score
8.45
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATCCCAAGTCCCAGTACCTGCAGAAATTCTCACCTCCACTTCTTG
Seq A exon
GAAAAGGACTAGCGGCTCTAGACGGACCCAAGTGGTTCCAGCATCGTCGCCTACTAACTCCTGGATTCCATTTTAACATCCTGAAAGCATACATTGAGGTGATGGCTCATTCTGTGAAAATGATGCTG
Seq C2 exon
GATAAGTGGGAGAAGATTTGCAGCACTCAGGACACAAGCGTGGAGGTCTATGAGCACATCAACTCGATGTCTCTGGATATAATCATGAAATGCGCTTTCAGCAAGGAGACCAACTGCCAGACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
PF0006717=p450=FE(9.2=100)
C2:
PF0006717=p450=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAAGTCCCAGTACCTGC
R:
TTTGTCTGGCAGTTGGTCTCC
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)